Easy blueberry chocolate chip muffins combine juicy blueberries with rich chocolate to create a moist, gluten-free muffin perfect for the whole family

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Perfect for busy families or households, these muffins are a go-to for a quick breakfast or a sweet afternoon snack. Packed with juicy blueberries and rich chocolate chips, they're sure to be a hit with both kids and adults.
This recipe was created with gluten-free all-purpose flour but it's versatile enough to work with regular whole wheat flour too (check out the substitution section for details). I've spent a lot of time experimenting with various gluten-free flours and mixes to develop recipes that consistently yield the best results (you can read more about that below). Along with this, I'm excited to share my top tips to guarantee you'll get a moist and fluffy muffin every time.
Let's dive into how you can whip up these moist, gluten-free goodies that are not just tasty but also cater to various dietary needs.
Recipe Variations:
Having a variety of easy, gluten-free breakfast and snack options is a lifesaver. Here are some more meal prep-friendly, easy-to-make grand-and-go recipes for families:
Classic Gluten-Free Chocolate Chip Muffins (vegan option)
Gluten-Free Blackberry Muffins (vegan)
One-Bowl Gluten-Free Baked Oat Squares (vegan)
Berry Cheesecake Overnight Oats (vegan option)

👪Why You'll Love This Muffin Recipe
Our blueberry chocolate chip muffins are another family favorite! Here is why I think this blueberry muffin recipe will be your favorite too:
- Moist and Delicious: Each muffin is perfectly moist, thanks to the blend of gluten-free flours and just the right amount of oil, ensuring a delightful eating experience every time.
- Allergy-Friendly: Free from common allergens like nuts, making them safe for school snacks.
- Healthy Ingredients: Packed with wholesome, gluten-free ingredients for a nutritious treat.
- Grab and Go: Perfect for busy mornings - just grab a muffin and you're set for the day.
- Travels Well: Ideal for road trips or camping, these muffins stay fresh and delicious on the go.
🫐Ingredients

Whipping up these gluten-free blueberry chocolate chip muffins is straightforward. Here is the full list of ingredients to get that classic muffin texture:
- Fresh Blueberries: The star of the show! Use fresh or wild blueberries during blueberry season or frozen when fresh isn't available. If using frozen, remember not to thaw them first.
- Gluten-Free All-Purpose Flour: When baking with gluten-free flour, ensure your mix includes xanthan gum. It's a game-changer for texture! If you are not on a gluten-free diet you can use all-purpose flour (wheat flour).
- Almond Flour: Almond flour adds the necessary moisture and a hearty texture. Sub with oat flour if you need a nut-free alternative.
- Mini Chocolate Chips (Gluten-Free): Who doesn't love chocolate? Ensuring they're gluten-free keeps our muffins allergy-friendly.
- Chia Seed: To make this recipe egg free we use a chia egg. By mixing chia seeds with water this mixture helps bind everything together, creating a smooth, cohesive batter.
- Milk (Dairy or Non-Dairy): Flexibility for those with dairy allergies or preferences.
- Vegetable Oil: For that perfect tender crumb.
- Granulated Sugar: Just the right amount of sweetness to balance the flavors.
- Vanilla Extract: A dash of vanilla brings a warm, aromatic flavor.
- Baking Powder: Our rising star, ensuring our muffins are fluffy and light.
- Salt: A pinch to enhance all the other flavors.
Missing and Ingredient or not gluten-free? Check out the substitution section
👩🏽🍳Step-By-Step Instructions
Step 1: Preheat and Prepare: Start by preheating your oven to 350°F (177°C). Line your muffin tin with paper liners or give it a light greasing. This step is crucial for easy removal of muffins later.
Step 2: Mix Dry Ingredients: In a large bowl, whisk together the all-purpose flour, almond flour, sugar, salt, and baking powder. Whisking not only combines but also aerates the ingredients, setting the stage for light and airy muffins.


Step 3: Combine Wet Ingredients: In another bowl, mix your wet ingredients. Use a whisk to help blend your ingredients together smoothly. This is an important step for achieving a consistent texture in your batter.


Step 4: Combine Wet and Dry: Now, gently add the wet ingredients to the dry. Stir until just combined, don't overmix. Overmixing can lead to tough muffins!


Step 5: Rest the Batter: Here's a unique tip for gluten-free baking: let your batter sit for 15 minutes. Gluten-free flours absorb more moisture, so this rest period is crucial. After 15 minutes, check the consistency and add more milk if needed. You are looking for a thick yogurt texture (see image).



Step 6: Fold in Chocolate Chips and Blueberries: Gently fold in the chocolate chips. Then, carefully fold in the blueberries, being gentle to prevent them from breaking. This step ensures even distribution without coloring your batter blue.



Step 7: Spoon into Muffin Tin: Spoon the batter into the muffin tin, filling each cup about ⅔ full. This ensures perfectly sized muffins that won't overflow.

Step 8: Bake and Cool: Bake for 20-25 minutes or until a toothpick inserted into the middle of the muffin comes out clean.


Let your gluten-free blueberry muffins cool in the pan for a few minutes, then transfer them to a wire rack. Cooling in the pan helps them set, while moving them to a rack prevents soggy bottoms.
💡Recipe Tips For The Perfect Moist Muffin
To ensure you get moist blueberry chocolate chip muffins, keep these tips in mind:
- Rest Your Batter: Let the batter rest for 15 minutes before baking. This step is crucial for gluten-free flours to absorb moisture and improve the muffin's texture.
- Avoid Overmixing: Stir the batter until just combined. Overmixing can lead to tough muffins.
- Check the Batter Consistency: Before baking, ensure the batter has the right consistency (refer to the image in the post). It should be neither too thick nor too runny.
- Fill Muffin Cups Appropriately: Fill each muffin cup about ⅔ full. This ensures even baking and perfect muffin tops. Use the Toothpick Test: To check if the muffins are done, insert a toothpick into the middle of a muffin. It should come out clean.
- Cooling is Important: Allow the muffins to cool in the pan for a few minutes before transferring them to a wire rack. This helps them set without becoming soggy.
By following these insights and tips, you'll be well-equipped to bake delicious, moist, and perfect gluten-free blueberry muffins every time.

⏲️ Meal Prep & Time-Saving Tips
In today's busy life of juggling multiple tasks, every minute saved is precious. Here are some time-saving tips for making these blueberry chocolate chip muffins:
- Prep Ingredients Ahead: Measure out your dry ingredients the night before and store them in an airtight container. This way, you're ready to go when it's time to bake.
- Use Paper Muffin Cups: Opt for paper muffin cups in your muffin tin for easy cleanup. It saves time on greasing the pan and washing up afterward.
- Batch Baking: Double the recipe and bake two batches. Muffins freeze well, so you'll have a quick snack or breakfast ready for busy days.
- Set a Kitchen Timer: While the muffin batter is resting, use this time to clean up or prep for another meal. A kitchen timer ensures you don't lose track of time.
🌾 Tips on Using Gluten-Free Flour Mixes
Baking with gluten-free flour can sometimes be frustrating, often yielding different results. In my gluten-free chocolate chip muffin post, I share my experience testing various gluten-free flours and the results. It's a handy guide for gluten-free baking and the importance of moisture and flour types for the final result.
For this particular gluten-free blueberry muffin, I experimented with 2 gluten-free flour mixes to ensure you get a perfect result! I tried both all-purpose and 1-to-1 gluten-free flour, observing the differences in texture and moisture absorption. This experiment yet again highlighted how each blend behaves uniquely.
While the 1-1 batter created a taller more 'fluffy' muffin, they were drier, more crumbly, and did not last as long as the muffins made with AP flour.


🙋🏽♀️Top Tip for Gluten-Free Mixes:
My recommendation for our chocolate chip blueberry muffins is to use an all-purpose gluten-free flour mix and to rest your batter before baking (and adjust if needed). This will give you the best results and fluffy soft muffins!

🍪Substitutions
In the kitchen, flexibility is key! Sometimes, we have to use what we have on hand, and that's perfectly okay! Here are some substitution ideas:
- Flour: If you don't have gluten-free all-purpose flour you can use 1-1 gluten free flour.
- NOT Gluten-Free: No problem, sub in regular all-purpose flour or whole wheat flour!
- Chia seeds: Swap this ingredient for ground flax (same measurement) or 2 eggs.
- Almond: Use oat flour in the same measurement or an equal amount of your main flour. The texture might vary slightly, but your muffins will still be delicious.
- Sugar: Out of granulated sugar? Try using brown sugar for a deeper flavor.
- Milk: Any type of milk works here, dairy or non-dairy. Feel free to use what you have in your fridge.
- Chocolate Chips: If you're out of chocolate chips, chop up a bar of chocolate, or skip them altogether for classic blueberry muffins.
- Blueberries: No blueberries? It's okay! This recipe is versatile. Try other berries or even dried fruits.
🥡Storage
Proper storage is crucial to keep your gluten-free blueberry muffins fresh and delicious. Here's how to do it:
In the Fridge: Store muffins in an airtight container or a resealable plastic bag. They are best in the fridge for 3-4 days.
Rewarming: To rewarm, place muffins in the microwave for a few seconds or warm them in the oven at 350°F (about 177°C) for a few minutes until heated through.
Freezer: Muffins freeze beautifully. Wrap them individually in plastic wrap or place them in a freezer bag. They can be frozen for up to 3 months. To thaw, leave them at room temperature or defrost in the microwave.

❔FAQ
Both fresh and frozen blueberries work well for muffin recipes. Fresh blueberries are great when in season, offering a bright, fresh flavor. Frozen blueberries have the advantage of being available year-round. Just remember, if using frozen, don't thaw them before adding to the muffin batter to prevent bleeding.
Xanthan gum is important in gluten-free baking as it helps mimic the binding effect of gluten. If your gluten-free flour doesn't include it, your muffins might be crumbly. I recommend using a gluten-free flour blend that contains xanthan gum for the best texture in your gluten-free blueberry muffins.
Dense muffins can result from overmixing the batter or not allowing it to rest. For moist muffins, remember to mix just until the ingredients are combined and let the batter sit for 15 minutes before baking. This allows the gluten-free flour to absorb moisture properly, leading to lighter, fluffier muffins.
🥣More Easy Breakfast and Snacks
I hope you enjoyed our gluten-free blueberry muffins, if you need another easy breakfast recipe be sure to check out these:
📖 Recipe

Easy Blueberry Chocolate Chip Muffins (Gluten-Free & Vegan)
Ingredients
- 1 ½ cups all-purpose flour gluten-free (we recommend Bob's Red Mill)
- ½ cup almond flour or substitute with ¼ cup oat flour
- ¾ cups sugar
- 2 teaspoon baking powder
- ½ teaspoon salt
- ⅓ cup vegetable oil
- 2 tablespoon chia seeds in 6 tablespoon water or sub 2 eggs
- ⅓ oat milk (dairy or non-dairy)
- 1 ½ teaspoon vanilla extract
- ¾ cups chocolate chips
- ¾ cups blueberries use directly from frozen if not using fresh
Instructions
- Preheat your oven to 350°F. Line a muffin tin with paper liners or lightly grease it.
- In a large bowl, whisk together the gluten-free all-purpose flour, almond flour, sugar, salt, and baking powder.
- In a separate bowl, whisk together the vegetable oil, egg, milk, and vanilla extract.
- Add the wet ingredients to the dry ingredients, stirring until just combined being careful not to overmix.
- Let the batter sit for 15 minutes. This step is crucial in gluten-free baking as it allows the flour to properly absorb moisture (see image in post).
- Gently fold in the chocolate chips, followed by the blueberries, taking care not to break them.
- Spoon the batter into the muffin tin, filling each cup about ⅔ full.
- Bake for 20-30 minutes, or until a toothpick inserted into the center of a muffin comes out clean.
- Allow the muffins to cool in the pan for a few minutes, then transfer to a wire rack to cool completely.
Josh Granek says
What a beautiful and informative post! Those look amazing and the kids absolutely devoured them. Big win!
Patricia Granek says
Thanks Josh!