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Home » Healthy Gluten-Free Snacks

Easy Gluten-Free Chocolate Chip Muffins

Updated: Jan 22, 2025 | Published: Jan 30, 2024 | by Patricia Granek | 2 Comments

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Our easy, fluffy, gluten-free chocolate chip muffins will quickly become your new favorite snack recipe! Easy to bake, always fluffy, and loaded with chocolate chips, our gluten-free muffins are the ultimate cozy snack or comforting breakfast.

A close view of a chocolate chip muffin on a wire cooling rack with a wooden surface below.

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Jump to:
  • 👪Why You'll Love These Gluten-Free Muffin
  • ⚡  How to Choose the Right Gluten-Free Flour
  • 🍫Ingredients
  • 🔁Substitutions
  • 👩🏽‍🍳Step-By-Step Instructions
  • 💡Recipe Tips: Get the Perfect Texture
  • 🥡Storage
  • ❔FAQ
  • 🥣More Easy Gluten-Free Recipes
  • 📖 Recipe

✋🏼E aí, pessoal! If you are new here, welcome. I'm Patricia, and I have been creating recipes for my mixed-diet family for many years now. As a busy mom, I am all about easy snacks and recipes that will satisfy everyone at my table.

These gluten-free chocolate chip muffins are no exception! They are fluffy, loaded with chocolate chips, and yummy enough that even my gluten-loving husband enjoys these 😉They're the kind of treat that makes you forget you're eating something gluten-free.

We spent a while testing different gluten-free flours to see which gave the best results, and we share all my tips and tricks here in this post to ensure you get the best chocolate chip muffins every time! In fact, we love these so much that we also created a gluten-free blueberry chocolate chip muffin recipe and our recent reader favorite, the blackberry banana oatmeal gluten-free muffin!

Want to know a weird fact: chocolate chip muffins got me through my Ph.D! Whenever I had to read a research paper I was not super excited about, I always got myself a chocolate chip muffin. So, a small part of me credits muffins for getting me through my doctorate 😂!

👪Why You'll Love These Gluten-Free Muffin

  • Allergy-Friendly: Our gluten-free chocolate chip muffins are also nut-free and easily adaptable to be dairy-free!
  • Fluffy with Lots of Chocolate Chips: Our gluten-free muffins were heavily tested to ensure you get the best fluffy texture every time.
  • Simple & Quick: Our recipe uses simple ingredients and straightforward steps!
  • On-the-Go Snacking: These muffins make the perfect portable snacks.
  • Kid-Approved: Loved by kids and ideal for an afternoon snack, these muffins are a family favorite.
A top-down view of freshly baked gluten-free chocolate chip muffins cooling on a wire rack, scattered with additional chocolate chips.

⚡  How to Choose the Right Gluten-Free Flour

When it comes to baking gluten-free chocolate chip muffins, the choice of flour can make a significant difference. I've experimented with different gluten-free flour blends and here's what I've learned:

Various brands and types of gluten-free flours displayed with their packages, including 1-1 Flour, All-Purpose Flour, Almond Flour, and Oat Flour, each in a small bowl with a label indicating the type of flour, set against a marble countertop.

All-Purpose Gluten-Free Flour Mixes

This is my go-to flour for most of my gluten-free baking recipes. Gluten-free AP flour has a more subtle, balanced taste and gives me the most consistent results. While it doesn't give the highest rise, the texture it offers is just right for that satisfying muffin experience. Here are the most popular brands:

  • Bob's Red Mill: Their AP flour has been my go-to brand from the start. I highly recommend this flour for this recipe. It is made with bean, sorghum, and potato flour, so it tends tonot be a liquid-loving flour mix. Easy to hydrate! This mix also has no xanthan gum, which i prefer as it allows me to adjust according to the recipe.
  • King Author All-Purpose GF flour: Also another great mix to use for baking. However, this mix also uses rice and potato as their main ingredients so it will absorb a bit more liquid.

1-to-1 Gluten-Free Flour Mixes

Gluten-free 1-1 flour (or cup-for-cup) has a slightly different composition than AP flour. Most feature rice flour as their main ingredient and also contain xanthan gum. Personally, I find these flours harder to hydrate. While they don't require any gums, I find that lack of control can sometimes give me inconsistent results

When testing this recipe, I had to add an extra 1 ½ cups of milk to get the right consistency for the gluten-free muffin batter. While the muffins did give a better rise, they dried out quicker and didn't stay fresh as long.

A gluten-free muffin made with 1-1 gluten-free flour mix, split in half to reveal a light and airy crumb, set against a wire cooling rack and a wooden backdrop.
Gluten-free muffins baked with all-purpose gluten-free flour mix, displayed on a wire rack, topped with chocolate chips, and one muffin broken open to show the texture.

🍫Ingredients

Our gluten-free chocolate chip muffins are a simple recipe that will give you a fluffy bakery-style experience right at home. Here's what you'll need:

Ingredients for gluten-free chocolate chip muffins laid out on a marble surface, including bowls of oat flour, gluten-free all-purpose flour, chocolate chips, sugar, butter, an egg, vanilla extract, oat milk, and baking powder, with each ingredient labeled.
  • Gluten-Free AP Flour: If possible, I highly recommend using Boib's Red Mill gluten-free AP flour. If you are using a 1-1 mix, please see the flour mix tips below!
  • Oat Flour: I like to add oat flour to help our gluten-free batter retain moisture. It also adds a lovely, subtle flavor that helps make this recipe unique.
  • Xanthan gum (Omit if mix contains): Xanthan gum helps gluten-free baking recipes achieve that perfect fluffy texture.
  • Mini Chocolate Chips: I like to use mini chocolate chips because they don't all sink to the bottom of the bowl. Be sure to check to ensure they're gluten-free.
  • Milk (Dairy or Non-Dairy): I prefer to use oat milk for this recipe but feel free to use your milk of choice.
  • Eggs help bind everything together. If you need an egg-free alternative, substitute with a chia or flax egg.
  • Softened Butter (Dairy or Non-Dairy): This makes the muffin batter rich and creamy. You can swap for vegetable oil or vegan butter if you prefer.
  • Granulated Sugar: Just the right amount to sweeten our muffins without overpowering them.
  • Baking Powder: Our rising star, ensuring our muffins get that lovely muffin top.
  • Vanilla Extract: A dash of vanilla brings all the flavors together.
  • Salt: A pinch to balance the flavors.

For full quantities, see the recipe card at the end of this post.

🔁Substitutions

Here are some ideas for substitutions in case you're missing an ingredient for these gluten-free chocolate chip muffins.

Swapping ingredients might slightly alter the texture

  • Dairy-Free Option: Opt for non-dairy milk, vegan chocolate chips, and vegetable oil for a delicious vegan version. The butter can be swapped for equal parts vegan butter or oil.
  • Vegan Option: We have had great success swapping out eggs for a chia egg, and butter and milk for vegan alternatives. Use a chia or flax egg instead of a regular egg. Mix 2 tablespoon of chia or flax with ¼ cup of water and let it sit for 10 minutes.
  • Xanthan gum Alternative: I have made this recipe without this ingredient many times with good results. The muffins may not be as fluffy but they will still taste great.
  • Bob's Red Mill Gluten-Free Flour Alternative: If you don't have a preferred blend, try King Arthur's Gluten-Free Measure for Measure Flour. It's a reliable choice for baking just keep an eye on the moisture of the batter and let it rest before baking!
  • Baking Powder: If you're out, mix ¼ teaspoon baking soda with ½ teaspoon cream of tartar for each teaspoon of baking powder needed.

👩🏽‍🍳Step-By-Step Instructions

Step 1: Preheat and Prepare:

Start by preheating your oven to 350°F (200°C). Line your muffin tray with paper liners or lightly grease it. Next, bring your egg, milk, and butter to room temperature.

Step 2: Mix Dry Ingredients:

In a large bowl, whisk together your gluten-free all-purpose flour, oat flour, baking powder, xanthan gum, and salt. This step is crucial for evenly distributing the leavening agents for a consistent fluffy texture in every bite.

A large glass bowl containing a blend of oat flour and gluten-free all-purpose flour on a marble kitchen surface.
The same glass bowl with a more thoroughly mixed combination of oat flour and gluten-free all-purpose flour.

Step 3: Cream Butter and Sugar:

In another bowl, beat the softened butter and sugar until light and fluffy, about 3-5 minutes. This process is key to creating a light and airy muffin batter. Please don't skip this step!

A hand mixer creaming together butter and sugar in a glass bowl, with a dusting of sugar around the bowl.
A creamy mixture of butter and sugar in a glass bowl after being whipped to a smooth consistency
A settled mixture of whipped butter and sugar in a glass bowl ready for the next step in the recipe.

Step 4: Add Wet Ingredients:

Now, add the room-temperature egg (or flax egg), milk, and vanilla extract to the creamed mixture. Mix until well combined, but be careful not to overmix.

An egg, vanilla extract, and oat milk added to the creamy mixture in a glass bowl for muffin batter.
A smooth and homogeneous muffin batter in a glass bowl, ready for the addition of dry ingredients.

Step 5: Combine Wet and Dry Mixtures:

Gently add the wet ingredients to the dry ingredients. Stir until just combined and avoid overworking the batter, which can lead to dense muffins.

A large glass bowl with a mixture of gluten-free muffin batter and a wooden spoon, before the wet and dry ingredients are fully combined.
Gluten free chocolate chip muffin batter in the glass bowl after being mixed, showing a smooth, creamy consistency with the wooden spoon still in the bowl.

Step 6: Rest the Gluten-Free Batter:

Let your batter rest for 10 minutes. This is an important step to ensure your flour hydrates properly. Because of the various types of gluten-free flour mixes, some will require more liquid.

After 10 minutes adjust your batter to the tight consistency. If your batter seems dry add in ¼ cup of milk at a time until you get a thick yogurt consistency (see image).

A scoop of gluten-free muffin batter on a wooden spoon above the bowl, demonstrating the batter's texture.
The gluten-free muffin batter fully mixed and rested to show the consistency of the batter and that it is ready for the addition of chocolate chips, with the wooden spoon resting in the bowl.

Step 7: Fold in Chocolate Chips:

Carefully fold in the chocolate chips. Then fold until well incorporated, but don't overmix. Overmixing the batter can result in dense muffins. Then, we recommend letting your batter rest for 10 minutes. This will allow the gluten-free batter to hydrate and allow you to correct for a dry batter. Your batter should have the consistency of soft Play-Doh, like the image below shows.

A heap of chocolate chips poured onto the center of the gluten-free muffin batter in the glass bowl.
The chocolate chips are now mixed into the gluten-free muffin batter, which is ready to be spooned into the muffin tin.

Step 8: Fill Muffin Cups:

Spoon the batter into the muffin cups using an ice cream scoop or large spoon, filling each about ⅔ full. This ensures a perfect rise and that lovely muffin top. Then, add a few chocolate chips to the tops of each gluten-free muffin.

Gluten-free muffin batter portioned into a red silicone muffin tin, ready to be baked.
The silicone muffin tin filled with batter, now topped with a few extra chocolate chips on each muffin before baking.

Step 9: Bake and Cool:

Bake for 25-35 minutes. My perfect timing is usually around 28 minutes, but keep an eye on oven temperatures, as they may vary. It is done when a toothpick comes out clean.

Allow your bakery-style muffins to cool in the pan for a few minutes, which will make them easier to handle. Then, transfer them to a wire rack to cool completely.

Freshly baked gluten-free chocolate chip muffins on a wire rack, with a rustic wooden table background.

🙋🏽‍♀️Top Tip for Choosing A Gluten-Free Flour

The main takeaway is to understand that each gluten-free flour blend will be different. Don't hesitate to adjust the liquid content of your gluten-free batter. Let your muffin batter rest for about 10 minutes before baking. Then, check and adjust the consistency of your batter. It should resemble thick yogurt. If it's too thick, gradually add milk, about ¼ cup at a time, until you achieve the desired consistency.

Gluten-free muffin batter fully mixed and rested to show the consistency of the batter and what it shoudl look like to make a fluffy muffin.

💡Recipe Tips: Get the Perfect Texture

Here are our top tips to help your gluten-free chocolate chip muffins get the best texture:

  • Check Your Flour Mix: Check to see if your gluten-free flour blend contains xanthan gum.
  • Room Temperature Ingredients: Bring your wet ingredients, especially milk and eggs, to room temperature before mixing. This prevents the butter from seizing and ensures a smoother, more homogenous batter.
  • Let the Batter Rest: Give your batter a 10-minute rest after mixing. This allows the gluten-free flour to absorb moisture evenly and gives you time to adjust.
  • Adjust your Batter: Different gluten-free flour blends absorb liquid differently. Pay attention to the batter's consistency and adjust the liquid accordingly. Aim for a thick yogurt-like texture for the best results.
  • Don’t Overmix: Mix your batter just until the ingredients are combined. Overmixing can lead to dense muffins, so a light hand is key.
  • Check for Doneness: Gluten-free muffins can be tricky to test for doneness. A toothpick inserted into the center should come out clean, but be careful not to overbake as they can dry out quickly.
A close-up of a gluten-free chocolate chip muffin with a section removed, showing the dense and moist crumb texture with chocolate chips.

🥡Storage

Proper storage is crucial for keeping your muffins fresh and delicious. Store muffins in an airtight container to maintain freshness. They can last up to a week in the fridge but are best enjoyed within the first few days. When reheating, I recommend microwaving the muffin for 10-15 seconds. Alternatively, warm them in the oven at 350°F for about 5 minutes.

Freezing: Gluten-free muffins freeze well. Wrap them individually in plastic wrap and then place them in a freezer-safe bag. They can be frozen for up to 3 months. Thaw overnight in the fridge or for a few hours at room temperature.

Overhead shot of a stack of gluten free muffins with a bite taken out of the center muffin showing the fluffy texture.
Image of a family of 5 (mom, dad and 3 boys) standing outside by a swing.

As a busy mom of three kids and a longtime food blogger, I’ve spent over a decade perfecting recipes that work for mixed-diet households. I’ve been cooking gluten- and dairy-free for years, but I’m still a foodie at heart, so flavor and texture are always my top priorities. This recipe is a family favorite that’s easy to make, and I hope it becomes a hit in your home too!

❔FAQ

Can I use King Arthur's Gluten-Free Flour for this recipe?

Yes, King Arthur's Gluten-Free Flour works well for this recipe. Just adjust the liquid as needed for the right batter consistency.

How can I ensure my gluten-free muffins don't turn out dry or crumbly?

To prevent dry or crumbly muffins, follow the tips above. The key tip is to ensure your batter has the right moisture balance. If it's too thick, add a bit more milk. Also, avoid overbaking – check for doneness around the 25-minute mark.

Can I substitute almond flour for oat flour

When testing this recipe, substituting almond flour for oat flour didn’t significantly impact the texture or taste of these muffins.

🥣More Easy Gluten-Free Recipes

  • Gluten free blackberry muffins topped with fresh blackberries and banana slices, garnished with oat flakes.
    Gluten-Free Blackberry Muffins (Easy & Moist)
  • Close up of a baked golden brown gluten-free bagels recipe cooling on a wire rack.
    Easy Gluten-Free Bagels: How To Get The Perfect Texture
  • A close-up of a single lemon muffin, showing the texture of the muffin and the vegan lemon curd on top.
    Fluffy Lemon Muffins with Lemon Curd (Gluten-free & Vegan)
  • Freshly baked gluten-free blueberry muffins cooling on a wire rack, studded with chocolate chips and bursting blueberries.
    Gluten-Free Blueberry Muffins with Chocolate Chips

🌟 Loved our ​gluten-free chocolate chip muffin treats? Let us know! I’d be thrilled if you could leave a comment, star rating, or share this recipe. Your feedback helps support and improve AtMyTable and helps others discover new favorites. Or come chat with me on Facebook or Instagram!

📖 Recipe

Gluten-Free Chocolate Chip Muffins Recipe Card

Patricia Granek
Our gluten-free chocolate chip muffins are the perfect fluffy chocolatey snack recipe. Made with simple ingredients for that classic flavor these gluten-free muffins will quickly become your new favorite. Perfect for breakfast, as a snack, or on the go.
5 from 2 votes
Print Recipe Pin Recipe
Prep Time 15 minutes mins
Cook Time 25 minutes mins
Total Time 45 minutes mins
Course Breakfast, Snack
Cuisine American, Gluten-free, vegetarian
Servings 12 muffins
Calories 250 kcal

Ingredients
 

  • 2 cups gluten-free all-purpose flour preferably Bob's Red Mill
  • ¼ cup oat flour
  • 2 teaspoon baking powder
  • 1 teaspoon xanthan gum *
  • ½ teaspoon salt
  • ⅓ cup butter
  • ¾ cups sugar
  • 1 cups oat milk
  • 2 eggs
  • 1 ½ teaspoon vanilla extract
  • ¾ cups mini chocolate chips
Step-By-Step ImagesScroll back for process images and recipe tips!

Instructions
 

  • Prep Oven: Set your oven to 350°F (200°C). Line a muffin tray with paper liners or lightly grease it. Ensure egg, milk, and butter are at room temperature.
  • Mix Dry Ingredients: Into a large bowl, add your gluten-free AP flour, oat flour, xantham gum, baking powder, and salt, and mix until well combined.
    2 cups gluten-free all-purpose flour, ¼ cup oat flour, 2 teaspoon baking powder, 1 teaspoon xanthan gum, ½ teaspoon salt
  • Cream Butter: In a separate bowl, using a mixer, beat the softened butter and sugar until they are light and fluffy, about 3-5 minutes.
    ⅓ cup butter, ¾ cups sugar
  • Mix Wet Ingredients: Then, add the room-temperature milk, eggs, and vanilla extract to the creamed butter mixture. Mix until well combined.
    1 cups oat milk, 2 eggs, 1 ½ teaspoon vanilla extract
  • Make Batter: Next, gently mix the wet ingredients with the dry ingredients until just combined being cautious not to overmix.
  • Add Chocolate Chips: Fold in the chocolate chips.
    ¾ cups mini chocolate chips
  • Rest: Let the batter rest for 10 minutes. If it is too dry, slowly add in ¼ cup of milk until it reaches a thick yogurt-like consistency.
  • Spoon Into Muffin Tin: Spoon the batter into muffin cups, filling each about ⅔ full, using an ice cream scoop for consistency.
  • Bake and Cool: Bake for 25-30 minutes or until a toothpick comes out clean. Allow to cool in the pan for a few minutes, then transfer to a wire rack.

Notes

*Xanthan gum: Omit your gluten-free flour mix that already contains it. 
Dairy-Free or Vegan Substitutions: To make these gluten-free chocolate chip muffins vegan-friendly, simply replace:
  • Large egg:  Use a chia or flax egg. To prepare, mix 1 tablespoon of ground flaxseed or whole chia seeds with 3 tablespoons of water and let it sit for about 5 minutes until it thickens
  • Butter: Replace with equal parts vegan butter or vegetable oil
Ceased Butter: If your whipped butter curdles or ceases, it is likely because your egg or milk are too cold. Slowly microwave the butter mixture to slightly warm it back up. Be careful not to cook it. Then simply whip it again. Having ceased butter will not affect the taste of this recipe and is more of a cosmetic issue.

Nutrition

Serving: 1muffinCalories: 250kcalCarbohydrates: 39gProtein: 4gFat: 10gSaturated Fat: 5gPolyunsaturated Fat: 1gMonounsaturated Fat: 2gCholesterol: 43mgSodium: 355mgPotassium: 33mgFiber: 3gSugar: 22gVitamin A: 263IUVitamin B12: 0.1µgVitamin C: 0.1mgCalcium: 62mgIron: 1mgZinc: 0.2mg
Tried this recipe? I’d love to hear how it turned out in the comments !

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Comments

    5 from 2 votes (2 ratings without comment)

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  1. Shari Jones says

    April 04, 2024 at 5:24 pm

    this recipe says baking soda in the list of ingredients and then baking powder in the directions... I'm sure it's just a typo, but which is it?? I'm excited to try it! 🙂

    Reply
    • Patricia Granek says

      April 10, 2024 at 2:28 pm

      Oh gosh thank you for catching that. I will change it right now! It is baking powder :0)

      Reply
Photo of Patricia Granek smiling with hair down

Oi, Hi, I'm Patricia!

I'm a Brazilian-born mom of 3 living in Toronto, with a Ph.D. in Health Science. I've been gluten-free for over 10 years, and after years navigating my family's mixed dietary needs, I created AtMyTable—quick, reliable, allergy-friendly recipes inspired by my Brazilian roots, where every meal is delicious enough to bring everyone together at one table.

More about me →

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